TY - JOUR AU - Berwick, D. C. AU - Tavaré, J. M. PY - 2004 DA - 2004// TI - Identifying protein kinase substrates: hunting for the organ-grinder's monkeys JO - Trends Biochem Sci VL - 29 UR - https://doi.org/10.1016/j.tibs.2004.03.004 DO - 10.1016/j.tibs.2004.03.004 ID - Berwick2004 ER - TY - JOUR AU - Johnson, S. A. AU - Hunter, T. PY - 2005 DA - 2005// TI - Kinomics: methods for deciphering the kinome JO - Nat Methods VL - 2 UR - https://doi.org/10.1038/nmeth731 DO - 10.1038/nmeth731 ID - Johnson2005 ER - TY - JOUR AU - Manning, B. D. AU - Cantley, L. C. PY - 2002 DA - 2002// TI - Hitting the target: emerging technologies in the search for kinase substrates JO - Sci STKE VL - 2002 ID - Manning2002 ER - TY - JOUR AU - Sopko, R. AU - Andrews, B. J. PY - 2008 DA - 2008// TI - Linking the kinome and phosphorylome: a comprehensive review of approaches to find kinase targets JO - Mol Biosyst VL - 4 UR - https://doi.org/10.1039/b801724g DO - 10.1039/b801724g ID - Sopko2008 ER - TY - JOUR AU - Holt, L. J. AU - Tuch, B. B. AU - Villén, J. AU - Johnson, A. D. AU - Gygi, S. P. AU - Morgan, D. O. PY - 2009 DA - 2009// TI - Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution JO - Science VL - 325 UR - https://doi.org/10.1126/science.1172867 DO - 10.1126/science.1172867 ID - Holt2009 ER - TY - JOUR AU - Lluís, F. AU - Perdiguero, E. AU - Nebreda, A. R. AU - Muñoz-Cánoves, P. PY - 2006 DA - 2006// TI - Regulation of skeletal muscle gene expression by p38 MAP kinases JO - Trends Cell Biol VL - 16 UR - https://doi.org/10.1016/j.tcb.2005.11.002 DO - 10.1016/j.tcb.2005.11.002 ID - Lluís2006 ER - TY - JOUR AU - Li, Y. AU - Jiang, B. AU - Ensign, W. Y. AU - Vogt, P. K. AU - Han, J. PY - 2000 DA - 2000// TI - Myogenic differentiation requires signalling through both phosphatidylinositol 3-kinase and p38 MAP kinase JO - Cell Signal VL - 12 UR - https://doi.org/10.1016/S0898-6568(00)00120-0 DO - 10.1016/S0898-6568(00)00120-0 ID - Li2000 ER - TY - JOUR AU - Perdiguero, E. AU - Ruiz-Bonilla, V. AU - Gresh, L. AU - Hui, L. AU - Ballestar, E. AU - Sousa-Victor, P. AU - Baeza-Raja, B. AU - Jardí, M. AU - Bosch-Comas, A. AU - Esteller, M. AU - Caelles, C. AU - Serrano, A. L. AU - Wagner, E. F. AU - Muñoz-Cánoves, P. PY - 2007 DA - 2007// TI - Genetic analysis of p38 MAP kinases in myogenesis: fundamental role of p38α in abrogating myoblast proliferation JO - EMBO J VL - 26 UR - https://doi.org/10.1038/sj.emboj.7601587 DO - 10.1038/sj.emboj.7601587 ID - Perdiguero2007 ER - TY - JOUR AU - Wang, H. AU - Xu, Q. AU - Xiao, F. AU - Jiang, Y. AU - Wu, Z. PY - 2008 DA - 2008// TI - Involvement of the p38 mitogen-activated protein kinase α, β, and γ isoforms in myogenic differentiation JO - Mol Biol Cell VL - 19 UR - https://doi.org/10.1091/mbc.E07-08-0817 DO - 10.1091/mbc.E07-08-0817 ID - Wang2008 ER - TY - JOUR AU - Enslen, H. AU - Raingeaud, J. AU - Davis, R. J. PY - 1998 DA - 1998// TI - Selective activation of p38 mitogen-activated protein (MAP) kinase isoforms by the MAP kinase kinases MKK3 and MKK6 JO - J Biol Chem VL - 273 UR - https://doi.org/10.1074/jbc.273.3.1741 DO - 10.1074/jbc.273.3.1741 ID - Enslen1998 ER - TY - JOUR AU - Boersema, P. J. AU - Raijmakers, R. AU - Lemeer, S. AU - Mohammed, S. AU - Heck, A. J. PY - 2009 DA - 2009// TI - Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics JO - Nat Protoc VL - 4 UR - https://doi.org/10.1038/nprot.2009.21 DO - 10.1038/nprot.2009.21 ID - Boersema2009 ER - TY - JOUR AU - Li, Q. R. AU - Ning, Z. B. AU - Tang, J. S. AU - Nie, S. AU - Zeng, R. PY - 2009 DA - 2009// TI - Effect of peptide-to-TiO2 beads ratio on phosphopeptide enrichment selectivity JO - J Proteome Res VL - 8 UR - https://doi.org/10.1021/pr900659n DO - 10.1021/pr900659n ID - Li2009 ER - TY - JOUR AU - Wang, F. AU - Dong, J. AU - Jiang, X. AU - Ye, M. AU - Zou, H. PY - 2007 DA - 2007// TI - Capillary trap column with strong cation-exchange monolith for automated shotgun proteome analysis JO - Anal Chem VL - 79 UR - https://doi.org/10.1021/ac070736f DO - 10.1021/ac070736f ID - Wang2007 ER - TY - JOUR AU - Wang, F. AU - Chen, R. AU - Zhu, J. AU - Sun, D. AU - Song, C. AU - Wu, Y. AU - Ye, M. AU - Wang, L. AU - Zou, H. PY - 2010 DA - 2010// TI - A fully automated system with online sample loading, isotope dimethyl labeling and multidimensional separation for high-throughput quantitative proteome analysis JO - Anal Chem VL - 82 UR - https://doi.org/10.1021/ac100075y DO - 10.1021/ac100075y ID - Wang2010 ER - TY - JOUR AU - Olsen, J. V. AU - Blagoev, B. AU - Gnad, F. AU - Macek, B. AU - Kumar, C. AU - Mortensen, P. AU - Mann, M. PY - 2006 DA - 2006// TI - Global, in vivo, and site-specific phosphorylation dynamics in signaling networks JO - Cell VL - 127 UR - https://doi.org/10.1016/j.cell.2006.09.026 DO - 10.1016/j.cell.2006.09.026 ID - Olsen2006 ER - TY - JOUR AU - Crooks, G. E. AU - Hon, G. AU - Chandonia, J. M. AU - Brenner, S. E. PY - 2004 DA - 2004// TI - WebLogo: a sequence logo generator JO - Genome Res VL - 14 UR - https://doi.org/10.1101/gr.849004 DO - 10.1101/gr.849004 ID - Crooks2004 ER - TY - JOUR AU - Hashimoto, E. AU - Takio, K. AU - Krebs, E. G. PY - 1982 DA - 1982// TI - Amino acid sequence at the ATP-binding site of cGMP-dependent protein kinase JO - J Biol Chem VL - 257 ID - Hashimoto1982 ER - TY - JOUR AU - Kamps, M. P. AU - Taylor, S. S. AU - Sefton, B. M. PY - 1984 DA - 1984// TI - Direct evidence that oncogenic tyrosine kinases and cyclic AMP-dependent protein kinase have homologous ATP-binding sites JO - Nature VL - 310 UR - https://doi.org/10.1038/310589a0 DO - 10.1038/310589a0 ID - Kamps1984 ER - TY - JOUR AU - Russo, M. W. AU - Lukas, T. J. AU - Cohen, S. AU - Staros, J. V. PY - 1985 DA - 1985// TI - Identification of residues in the nucleotide binding site of the epidermal growth factor receptor/kinase JO - J Biol Chem VL - 260 ID - Russo1985 ER - TY - JOUR AU - Zoller, M. J. AU - Nelson, N. C. AU - Taylor, S. S. PY - 1981 DA - 1981// TI - Affinity labeling of cAMP-dependent protein kinase with p-fluorosulfonylbenzoyl adenosine: covalent modification of lysine 71 JO - J Biol Chem VL - 256 ID - Zoller1981 ER - TY - JOUR AU - Knight, J. D. AU - Qian, B. AU - Baker, D. AU - Kothary, R. PY - 2007 DA - 2007// TI - Conservation, variability and the modeling of active protein kinases JO - PLoS One VL - 2 UR - https://doi.org/10.1371/journal.pone.0000982 DO - 10.1371/journal.pone.0000982 ID - Knight2007 ER - TY - JOUR AU - Schwartz, D. AU - Gygi, S. P. PY - 2005 DA - 2005// TI - An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets JO - Nat Biotechnol VL - 23 UR - https://doi.org/10.1038/nbt1146 DO - 10.1038/nbt1146 ID - Schwartz2005 ER - TY - JOUR AU - Manning, G. AU - Whyte, D. B. AU - Martinez, R. AU - Hunter, T. AU - Sudarsanam, S. PY - 2002 DA - 2002// TI - The protein kinase complement of the human genome JO - Science VL - 298 UR - https://doi.org/10.1126/science.1075762 DO - 10.1126/science.1075762 ID - Manning2002 ER - TY - JOUR AU - Andrés, V. AU - Walsh, K. PY - 1996 DA - 1996// TI - Myogenin expression, cell cycle withdrawal, and phenotypic differentiation are temporally separable events that precede cell fusion upon myogenesis JO - J Cell Biol VL - 132 UR - https://doi.org/10.1083/jcb.132.4.657 DO - 10.1083/jcb.132.4.657 ID - Andrés1996 ER - TY - JOUR AU - Diebold, M. L. AU - Koch, M. AU - Loeliger, E. AU - Cura, V. AU - Winston, F. AU - Cavarelli, J. AU - Romier, C. PY - 2010 DA - 2010// TI - The structure of an Iws1/Spt6 complex reveals an interaction domain conserved in TFIIS, Elongin A and Med26 JO - EMBO J VL - 29 UR - https://doi.org/10.1038/emboj.2010.272 DO - 10.1038/emboj.2010.272 ID - Diebold2010 ER - TY - JOUR AU - Yoh, S. M. AU - Cho, H. AU - Pickle, L. AU - Evans, R. M. AU - Jones, K. A. PY - 2007 DA - 2007// TI - The Spt6 SH2 domain binds Ser2-P RNAPII to direct Iws1-dependent mRNA splicing and export JO - Genes Dev VL - 21 UR - https://doi.org/10.1101/gad.1503107 DO - 10.1101/gad.1503107 ID - Yoh2007 ER - TY - JOUR AU - Asally, M. AU - Yasuda, Y. AU - Oka, M. AU - Otsuka, S. AU - Yoshimura, S. H. AU - Takeyasu, K. AU - Yoneda, Y. PY - 2011 DA - 2011// TI - Nup358, a nucleoporin, functions as a key determinant of the nuclear pore complex structure remodeling during skeletal myogenesis JO - FEBS J VL - 278 UR - https://doi.org/10.1111/j.1742-4658.2010.07982.x DO - 10.1111/j.1742-4658.2010.07982.x ID - Asally2011 ER - TY - JOUR AU - Obenauer, J. C. AU - Cantley, L. C. AU - Yaffe, M. B. PY - 2003 DA - 2003// TI - Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs JO - Nucleic Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg584 DO - 10.1093/nar/gkg584 ID - Obenauer2003 ER - TY - STD TI - Warde-Farley D, Donaldson SL, Comes O, Zuberi K, Badrawi R, Chao P, Franz M, Grouios C, Kazi F, Lopes CT, Maitland A, Mostafavi S, Montojo J, Shao Q, Wright G, Bader GD, Morris Q: The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function. Nucleic Acids Res. 2010, W214-W220. 38 Web server ID - ref29 ER - TY - JOUR AU - Knight, J. D. AU - Kothary, R. PY - 2011 DA - 2011// TI - The myogenic kinome: protein kinases critical to mammalian skeletal myogenesis JO - Skelet Muscle VL - 1 UR - https://doi.org/10.1186/2044-5040-1-29 DO - 10.1186/2044-5040-1-29 ID - Knight2011 ER - TY - JOUR AU - Huang, S. Y. AU - Tsai, M. L. AU - Chen, G. Y. AU - Wu, C. J. AU - Chen, S. H. PY - 2007 DA - 2007// TI - A systematic MS-based approach for identifying in vitro substrates of PKA and PKG in rat uteri JO - J Proteome Res VL - 6 UR - https://doi.org/10.1021/pr070134c DO - 10.1021/pr070134c ID - Huang2007 ER - TY - JOUR AU - Troiani, S. AU - Uggeri, M. AU - Moll, J. AU - Isacchi, A. AU - Kalisz, H. M. AU - Rusconi, L. AU - Valsasina, B. PY - 2005 DA - 2005// TI - Searching for biomarkers of Aurora-A kinase activity: identification of in vitro substrates through a modified KESTREL approach JO - J Proteome Res VL - 4 UR - https://doi.org/10.1021/pr050018e DO - 10.1021/pr050018e ID - Troiani2005 ER - TY - JOUR AU - Blethrow, J. D. AU - Glavy, J. S. AU - Morgan, D. O. AU - Shokat, K. M. PY - 2008 DA - 2008// TI - Covalent capture of kinase-specific phosphopeptides reveals Cdk1-cyclin B substrates JO - Proc Natl Acad Sci USA VL - 105 UR - https://doi.org/10.1073/pnas.0708966105 DO - 10.1073/pnas.0708966105 ID - Blethrow2008 ER - TY - JOUR AU - Ruiz-Bonilla, V. AU - Perdiguero, E. AU - Gresh, L. AU - Serrano, A. L. AU - Zamora, M. AU - Sousa-Victor, P. AU - Jardí, M. AU - Wagner, E. F. AU - Muñoz-Cánoves, P. PY - 2008 DA - 2008// TI - Efficient adult skeletal muscle regeneration in mice deficient in p38β, p38γ and p38δ MAP kinases JO - Cell Cycle VL - 7 UR - https://doi.org/10.4161/cc.7.14.6273 DO - 10.4161/cc.7.14.6273 ID - Ruiz-Bonilla2008 ER - TY - JOUR AU - Klingbeil, C. K. AU - Hauck, C. R. AU - Hsia, D. A. AU - Jones, K. C. AU - Reider, S. R. AU - Schlaepfer, D. D. PY - 2001 DA - 2001// TI - Targeting Pyk2 to β1-integrin-containing focal contacts rescues fibronectin-stimulated signaling and haptotactic motility defects of focal adhesion kinase-null cells JO - J Cell Biol VL - 152 UR - https://doi.org/10.1083/jcb.152.1.97 DO - 10.1083/jcb.152.1.97 ID - Klingbeil2001 ER -