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Fig. 3 | Skeletal Muscle

Fig. 3

From: Linkages between changes in the 3D organization of the genome and transcription during myotube differentiation in vitro

Fig. 3

Distribution of transcript levels of genes residing within the confines of the negatively correlated interacting regions in pairwise condition comparisons. Transcript levels (expressed as FPKM) of genes whose a TSSs had reduced PC1 values and b TSSs showed increases in PC1 values within negatively correlated interacting regions in myotubes vs myoblasts comparison. c Transcript levels of genes whose TSSs showed increases in PC1 values within negatively correlated interacting regions in AraC-treated myotubes vs myotubes comparison. Genes which had FPKM values equal to 0 in both conditions are excluded from the analyses; however, genes having FPKM value equal to 0 in one of the conditions and detectable FPKM value in the other condition are included (p values–paired Wilcoxon test, p < 0.001***, p = 0.01**, NS not significant). Outliers not plotted

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