Fig. 3From: Linkages between changes in the 3D organization of the genome and transcription during myotube differentiation in vitroDistribution of transcript levels of genes residing within the confines of the negatively correlated interacting regions in pairwise condition comparisons. Transcript levels (expressed as FPKM) of genes whose a TSSs had reduced PC1 values and b TSSs showed increases in PC1 values within negatively correlated interacting regions in myotubes vs myoblasts comparison. c Transcript levels of genes whose TSSs showed increases in PC1 values within negatively correlated interacting regions in AraC-treated myotubes vs myotubes comparison. Genes which had FPKM values equal to 0 in both conditions are excluded from the analyses; however, genes having FPKM value equal to 0 in one of the conditions and detectable FPKM value in the other condition are included (p values–paired Wilcoxon test, p < 0.001***, p = 0.01**, NS not significant). Outliers not plottedBack to article page