A reference single-cell transcriptomic atlas of human skeletal muscle tissue reveals bifurcated muscle stem cell populations

Table 1 List of reagents and other resources used in this study

*Reagents*
Dispase II (neutral protease, grade II)		Sigma-Aldrich	04942078001
Collagenase D, from Clostridium histolyticum		Sigma-Aldrich	11088866001
*Commercial kits*
Chromium Single Cell 3' Library & Gel Bead Kit v2		10X Genomics	CG00052 (protocol)
Chromium Single Cell 3' Library & Gel Bead Kit v3		10X Genomics	CG000183 (protocol)
*Deposited data*
Human ligand-receptor database		[43]	https://www.ncbi.nlm.nih.gov/pubmed/26198319
Human scRNA-seq dataset		This paper	GSE143704
Mouse scRNA-seq dataset		[29]	GSE143437
*Software packages and algorithms*
Cell Ranger 3.1.0 (July 24, 2019)	10X Genomics	https://support.10xgenomics.com/single-cell-gene-expression/software/downloads/latest
Seurat 3.1.0	[14]	https://github.com/satijalab/seurat
Scanorama (online version as of 2019-11-19)	[13]	https://github.com/brianhie/scanorama
Harmony (online version as of 2019-11-19)	[54]	https://github.com/immunogenomics/harmony
biomaRt 2.43.1 (online version as of 2020-01-08)	[64]	https://bioconductor.org/packages/release/bioc/html/biomaRt.html
Gene Set Enrichment Analysis (4.0.3)	[65]	http://software.broadinstitute.org/gsea/index.jsp
Ingenuity Pathway Analysis (IPA, 2019-08-30)	QIAGEN	https://www.qiagenbioinformatics.com/products/ingenuity-pathway-analysis/

ISSN: 2044-5040