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Table 1 Top 50 SNPs in a genotypic model

From: Sarcoglycan A mutation in miniature dachshund dogs causes limb-girdle muscular dystrophy 2D

CHR SNP A1 A2 AFF UNAFF P
9 9:25951885 C T 9/0/0 0/8/10 2.134e−07
9 9:25983462 C G 9/0/0 0/7/11 2.134e−07
9 9:26288724 C T 9/0/0 0/6/12 2.134e−07
9 9:26292362 G A 9/0/0 0/6/12 2.134e−07
9 9:26334051 A G 9/0/0 0/6/12 2.134e−07
9 9:26345821 T C 9/0/0 0/7/11 2.134e−07
9 9:26347986 C T 9/0/0 0/8/10 2.134e−07
34 34:10784553 G A 9/0/0 0/12/6 2.134e−07
34 34:10786591 C A 9/0/0 0/12/6 2.134e−07
9 9:25213000 T C 9/0/0 1/6/11 2.134e−06
9 9:26313263 C T 9/0/0 1/6/11 2.134e−06
18 18:39450835 G A 9/0/0 1/11/6 2.134e−06
9 9:24972813 C G 9/0/0 1/7/10 4.267e−06
9 9:24974987 G A 9/0/0 1/7/10 4.267e−06
9 9:24994921 T G 9/0/0 1/7/10 4.267e−06
9 9:25040066 G C 9/0/0 1/7/10 4.267e−06
9 9:25046429 T G 9/0/0 1/10/7 4.267e−06
9 9:25049565 G A 9/0/0 1/10/7 4.267e−06
9 9:26020165 A G 9/0/0 1/10/7 4.267e−06
9 9:26398124 C T 9/0/0 1/8/9 6.401e−06
18 18:39447278 C T 9/0/0 1/9/8 6.401e−06
9 9:25373707 C T 9/0/0 2/4/12 1.174e−05
4 4:27820959 T C 9/0/0 2/10/6 1.387e−05
4 4:27831539 T C 9/0/0 2/10/6 1.387e−05
4 4:27868268 A G 9/0/0 2/10/6 1.387e−05
9 9:30966212 C T 9/0/0 2/6/10 1.387e−05
34 34:10891254 G A 9/0/0 2/10/6 1.387e−05
34 34:10893260 A C 9/0/0 2/10/6 1.387e−05
9 9:19304983 C T 9/0/0 2/8/8 1.984e−05
9 9:26289840 A G 9/0/0 2/8/8 1.984e−05
32 32:10752374 T C 9/0/0 2/8/8 1.984e−05
1 1:106899476 A G 9/0/0 2/11/5 2.347e−05
9 9:25394028 C G 9/0/0 2/11/5 2.347e−05
9 9:24966631 C G 9/0/0 2/7/9 3.136e−05
9 9:25053412 A G 9/0/0 2/9/7 3.136e−05
9 9:25065255 T C 9/0/0 2/9/7 3.136e−05
9 9:25444400 T C 9/0/0 2/7/9 3.136e−05
9 9:25493635 A G 9/0/0 2/7/9 3.136e−05
34 34:10909969 C A 9/0/0 2/9/7 3.136e−05
4 4:26209208 C T 9/0/0 3/4/11 5.868e−05
6 6:28794412 G T 9/0/0 3/11/4 5.868e−05
4 4:26426217 A G 9/0/0 3/5/10 9.388e-05
6 6:28865921 G T 9/0/0 3/12/3 9.388e−05
9 9:18958229 G A 9/0/0 3/10/5 9.388e−05
9 9:19012795 A T 9/0/0 3/10/5 9.388e−05
9 9:19023729 T G 9/0/0 3/10/5 9.388e−05
9 9:19122430 A G 9/0/0 3/10/5 9.388e−05
9 9:19123171 T G 9/0/0 3/10/5 9.388e−05
9 9:24989017 A G 9/0/0 3/10/5 9.388e−05
9 9:25380184 A C 9/0/0 3/5/10 9.388e−05
  1. The table lists the top 50 SNPs in which all nine cases were required to be homozygous, while controls could have all three genotypes. The chromosome (CHR), position (SNP), minor allele (A1), major allele (A2), number of affected dogs homozygous for the minor allele/heterozygous/homozygous for the major allele (AFF), number of unaffected dogs homozygous for the minor allele/heterozygous/homozygous for the major allele (UNAFF), and the p value for association (P) are provided