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Table 2 Top 50 SNPs in a recessive model

From: Sarcoglycan A mutation in miniature dachshund dogs causes limb-girdle muscular dystrophy 2D

CHR

SNP

A1

A2

AFF

UNAFF

P

9

9:25951885

C

T

9/0

0/18

2.134e−07

9

9:25983462

C

G

9/0

0/18

2.134e−07

9

9:26288724

C

T

9/0

0/18

2.134e−07

9

9:26292362

G

A

9/0

0/18

2.134e−07

9

9:26334051

A

G

9/0

0/18

2.134e−07

9

9:26345821

T

C

9/0

0/18

2.134e−07

9

9:26347986

C

T

9/0

0/18

2.134e−07

34

34:10784553

G

A

9/0

0/18

2.134e−07

34

34:10786591

C

A

9/0

0/18

2.134e−07

9

9:24972813

C

G

9/0

1/17

2.134e−06

9

9:24974987

G

A

9/0

1/17

2.134e−06

9

9:24994921

T

G

9/0

1/17

2.134e−06

9

9:25040066

G

C

9/0

1/17

2.134e−06

9

9:25046429

T

G

9/0

1/17

2.134e−06

9

9:25049565

G

A

9/0

1/17

2.134e−06

9

9:25213000

T

C

9/0

1/17

2.134e−06

9

9:26020165

A

G

9/0

1/17

2.134e−06

9

9:26313263

C

T

9/0

1/17

2.134e−06

9

9:26398124

C

T

9/0

1/17

2.134e−06

18

18:39447278

C

T

9/0

1/17

2.134e−06

18

18:39450835

G

A

9/0

1/17

2.134e−06

1

1:106899476

A

G

9/0

2/16

1.174e−05

4

4:27820959

T

C

9/0

2/16

1.174e−05

4

4:27831539

T

C

9/0

2/16

1.174e−05

4

4:27868268

A

G

9/0

2/16

1.174e−05

9

9:19304983

C

T

9/0

2/16

1.174e−05

9

9:24966631

C

G

9/0

2/16

1.174e−05

9

9:25053412

A

G

9/0

2/16

1.174e−05

9

9:25065255

T

C

9/0

2/16

1.174e−05

9

9:25373707

C

T

9/0

2/16

1.174e−05

9

9:25394028

C

G

9/0

2/16

1.174e−05

9

9:25444400

T

C

9/0

2/16

1.174e−05

9

9:25493635

A

G

9/0

2/16

1.174e−05

9

9:26289840

A

G

9/0

2/16

1.174e−05

9

9:30966212

C

T

9/0

2/16

1.174e−05

32

32:10752374

T

C

9/0

2/16

1.174e−05

34

34:10891254

G

A

9/0

2/16

1.174e−05

34

34:10893260

A

C

9/0

2/16

1.174e−05

34

34:10909969

C

A

9/0

2/16

1.174e−05

1

1:120378888

C

T

9/0

3/15

4.694e−05

4

4:26209208

C

T

9/0

3/15

4.694e−05

4

4:26216500

A

G

9/0

3/15

4.694e−05

4

4:26426217

A

G

9/0

3/15

4.694e−05

6

6:28794412

G

T

9/0

3/15

4.694e−05

6

6:28865921

G

T

9/0

3/15

4.694e−05

6

6:70411742

T

A

9/0

3/15

4.694e−05

9

9:18928814

C

T

9/0

3/15

4.694e−05

9

9:18958229

G

A

9/0

3/15

4.694e−05

9

9:19012795

A

T

9/0

3/15

4.694e−05

9

9:19023729

T

G

9/0

3/15

4.694e−05

  1. The table lists SNPs in which all nine cases were required to be homozygous for the minor allele and the controls could be either heterozygous or homozygous for the major allele. The table lists the top 50 SNPs in which all nine cases were required to be homozygous, while controls could have all three genotypes. The chromosome (CHR), position (SNP), minor allele (A1), major allele (A2), number of affected dogs homozygous for the minor allele/heterozygous plus homozygous for the major allele (AFF), number of unaffected dogs homozygous for the minor allele/heterozygous plus homozygous for the major allele (UNAFF), and the p value for association (P) are provided
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Skeletal Muscle

ISSN: 2044-5040

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