Table 1 Consensus muscle gene sets
From: Muscle Gene Sets: a versatile methodological aid to functional genomics in the neuromuscular field
Category | Consensus set name (indicating tissue type and comparison) | # Muscle Gene Sets |
|---|---|---|
Aging and development | HumanSkelMusc_Aging_v_Young | 16 (8 up, 8 down) |
MurineSkelMusc_12orMoreMonths_v_1to5Months | 8 (4 up, 4 down) | |
MurineSkelMusc6WkOrOlder_Mdx_v_Healthy | 36 (18 up, 18 down) | |
Differentiation | MurineMyotube_12to24hDiff_v_Undiff | 14 (7 up, 7 down) |
MurineMyotube_2orMoreDaysDiff_v_Undiff | 38 (19 up, 19 down) | |
MurineMyotube_9hOrLessDiff_v_Undiff | 18 (9 up, 9 down) | |
Disuse | AnySpeciesSkelMusc_AtrophyDisuseOrInactivated_v_Control | 28 (14 up, 14 down) |
Exercise | HumanSkelMusc_1DayOrLessAfterExercise_v_Before | 18 (9 up, 9 down) |
HumanSkelMusc_8wkOrMoreAfterResistanceTraining_v_Before | 12 (6 up, 6 down) | |
Metabolism | HumanSkelMusc_Type2_Diabetes_v_Healthy | 10 (5 up, 5 down) |
MurineSkelMusc_HighFatDiet_v_Control | 18 (9 up, 9 down) | |
Myopathy | HumanOrMurineSkelMusc_Dysferlinopathy_v_Control | 12 (6 up, 6 down) |
HumanSkelMusc_DMD_v_Healthy | 8 (4 up, 4 down) | |
MurineSkelMusc_Calpainopathy_v_Healthy | 14 (7 up, 7 down) |